From Phaistos

User Manual

A detailed user manual with instructions on installing Phaistos and running simulations is available from


The Phaistos source code is fully commented using Doxygen, available at


How do I cite PHAISTOS?

The main citation for PHAISTOS is:

  • Boomsma W, Frellsen J, Harder T, Bottaro S, Johansson KE, et al. (2013) PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure. Journal of Computational Chemistry. doi:10.1002/jcc.23292